Mathematical software new more robust and reliable xgeqp3 and xgeqpf routines qr factorization with column pivoting in lapack 3. The permutation returned by the panel rank revealing factorization is applied on the rows of the input matrix, and the lfactor of the panel is computed based on the rfactor of the strong rrqr factorization. Multifrontal multithreaded rankrevealing sparse qr factorization. By applying another in essence also rankrevealing orthogonal factorization. Mechanical engineering, university of california, santa barbara verified email at engr. On the failure of rank revealing qr factorization software.
The problem of finding a rankrevealing qr rrqr factorisation of a matrix a. Drmac z and bujanovic z 2008 on the failure of rankrevealing qr factorization software a case study, acm transactions on mathematical software toms, 35. This paper reports an unexpected and rather erratic behavior of the lapack software implementation of the qr factorization with busingergolub column pivoting. The first factorization of this type, the qr factorization with column pivoting, referred to as qrcp, was introduced in. Rank revealing factorizations based on qr factorization with column permutations or lu factorization with row and column permutations are also efficient approaches for computing a lowrank approximation. On the failure of rank revealing qr factorization software citeseerx. The most accurate rank revealing factorization is, of course, the singular value. Its utility arises from the numerical stability offered by orthogonal transformations. Computer science division and mathematics department, uc. Tallandskinny qr factorization with approximate householder. We show that carrqr reveals the numerical rank of a matrix in an analogous way to qr factorization with column pivoting qrcp. Rankrevealing qr factorization file exchange matlab central. Software practicalities are emphasized throughout, with particular reference to lapack and matlab. Qr factorization, rank revealing, column pivoting, minimize communication.
The algorithm is blocked, to allow it to be implemented efficiently. Both computational and storage costs of manipulating such matrices may be reduced by taking advantages of their lowrank properties. The routine uses a qr factorization with column pivoting. This examples should convince the reader that the problem is serious, and that it may lead to numerical catastrophes in engineering applications.
The problem of finding a rankrevealing qr rrqr factorisation of a matrix a consists of permuting the columns of a such that the resulting qr. An rrqr factorization or rank revealing qr factorization is a matrix decomposition algorithm based on the qr factorization which can be used to determine the rank of a matrix. Let m qr be the qr factorization of m with its columns permuted according to the permutation matrix. San jose state university sjsu scholarworks masters theses masters theses and graduate research 1997 rank revealing qr factorizations lily l. Communication avoiding rank revealing qr factorization. We present a novel method for the qr factorization of large tallandskinny matrices that introduces an approximation technique for computing the householder vectors. Siam journal on numerical analysis volume, issue 6 10. Of course there is much good matlab software but it does not satisfy the criteria that we have chosen. This fixes a subtle numerical bug caused by underestimate of the distance to singularity dating back to linpack that can give completely wrong results. Drmac z and bujanovic z 2008 on the failure of rankrevealing qr factorization software a case. Qr factorization, rankrevealing orthogonal factorization. International journal for computational methods in engineering science and mechanics 16. Communication avoiding rank revealing qr factorization with. To compute a lowrank approximation of a dense matrix, in this paper, we study the performance of qr factorization with column pivoting or with restricted pivoting on.
The algorithm uses a reduction strategy to perform the factorization which in turn allows a good degree of parallelism. Existence of generalized mt factorizations in this section, we first define the generalized lur factorization of a given matrix a e r, and then we give an equivalence condition for the existence of the lur factorization. Key words, orthogonal factorization, rankrevealing factorization, numericalrank. This paper and the accompanying algorithm describe and analyze a suite of codes that implement combinations and modifications of several previously published methods for rrqr. The singular value decomposition can be used to generate an rrqr, but it is not an efficient method to do so. Wilkinson submitted by jack dongarra abstract an algorithm is presented for computing a column permutation li and a qr factorization a ii qr of an m by n m n matrix a such that a. The matrix q is orthogonal and r is upper triangular, so a qr is the required qrdecomposition. Within each frontal matrix, lapack and the multithreaded blas enable the method to obtain high performance on. Rank revealing factorizations, and low rank approximations l. Efficient algorithms for computing a strong rankrevealing qr factorization. That allows us to look at the diagonal elements to figure out when to cut things off.
On the failure of rankrevealing qr factorization softwarea case study z drmac, z bujanovic acm transactions on mathematical software toms 35 2, 128, 2008. Demmel, laura grigoriy, ming gu z, and hua xiang x abstract. The need for single vector pivoting in classical algorithms for computing qr factorizations is avoided by the use of randomized sampling to find blocks of pivot vectors at once. The ones marked may be different from the article in the profile. Implementation of jacobi rotations for accurate singular value computation in floating point arithmetic, siam j. Mathworks is the leading developer of mathematical computing software for. Finally, x6 recalls the importance of pivoting from the numerical point of view.
Can also handle complex and single precision arrays. Although the upper bound of a quantity involved in the characterization of a rank revealing. If we take a qr factorization with pivoting, the diagonal elements of r are in decreasing order. Rankone update to a rank revealing qr rrqr factorization. We develop algorithms and implementations for computing rankrevealing qr rrqr factorizations of dense matrices. This approach is very competitive on a hybrid platform equipped with a graphics processor, with a performance advantage over the conventional factorization due to the reduced amount of data transfers between the graphics. On the failure of rank revealing qr factorization software a case study. Qr decomposition is often used to solve the linear least squares problem and is the basis for a particular eigenvalue algorithm, the qr algorithm.
The roster of standard matrix decompositions includes the pivoted qr factorization, the eigenvalue decomposition. Accuracy and stability of numerical algorithms guide books. A pivoting strategy based on the idea of local maximum volumes is introduced and a proof of the. Citeseerx document details isaac councill, lee giles, pradeep teregowda. Suitesparseqr is a sparse qr factorization package based on the multifrontal method. Mathematics and computer science division, argonne national laboratory, 9700 s. New parallel rankrevealing qr factorization algorithms. Their combined citations are counted only for the first article.
On the failure of rankrevealing qr factorization softwarea case study. The 30year old problem, dating back to linpack, has undetectedly badly affected many computational routines and software packages, as well as the study of rankrevealing qr factorizations. In this paper we introduce carrqr, a communication avoiding rank revealing qr. The first one uses the for loop to compute the upper. Lowrank matrices arise in many scientific and engineering computations. In section 2, we give an overview of the previous results on rank revealing lu and qr factorizations. Factorizations that are usually rank revealing but have a possibility of failure. A note on the scalapack routines for computing the qr. Lu factorization with panel rank revealing pivoting and its. Strong rankrevealing qr factorization math berkeley. We develop algorithms and implementations for computing rank revealing qr rrqr factorizations of dense matrices.
Chan has noted that, even when the singular value decomposition of a matrix a is known, it is still not obvious how to find a rankrevealing qr factorization rrqr of a if a has numerical rank deficiency. In this paper we introduce carrqr, a communication avoiding rank revealing qr factorization with tournament pivoting. A rankrevealing qr rrqr factorization is an efficient way to compute a reasonable representation of the null space of a matrix. Rank revealing qr factorizations sjsu scholarworks. Truncated lu factorization with column and row tournament pivoting experimental results, lu crtp. In this paper, we show how to construct a qr factorization which can also reveal the rank reliably. An rrqr factorization or rankrevealing qr factorization is a matrix decomposition algorithm based on the qr factorization which can be used to determine the rank of a matrix. It can also be used to estimate rank of matrix rank revealing qr decomposition. The problem of finding a rank revealing qr rrqr factorisation of a matrix a consists of permuting the columns of a such that the resulting qr factorisation contains an upper triangular matrix who. Pdf we present a block algorithm for computing rankrevealing qr. To compute optionally a rank revealing qr factorization of a real general mbyn real or complex matrix a, which may be rank deficient, and estimate its effective rank using incremental condition estimation. Scientific programming hindawi publishing corporation. Theres probably a better way to do this with a rank revealing qr, but the following will work in a pinch. Pdf a block algorithm for computing rankrevealing qr.
We discuss how pivoting contributes to more accurate factorization, and how. Van straalen 20 experiences from software engineering of large scale amr multiphysics code frameworks, at the first workshop on sustainable software for science. On the failure of rank revealing qr factorization software the netlib. Computing rankrevealing qr factorizations of dense. For the qr factorization using classic gramschmidt algorithm, i found the 2 different implementations below. The usual tradeoff is that the svd is more expensive but can reveal rank more reliably. Both the singular value decomposition svd and the qr factorization play central roles in signal processing algorithms. This also calls for serious rethinking of the compiler and debugger design for. First, we develop an efficient block algorithm for approximating an rrqr factorization, employing a windowed version of the commonly used golub pivoting strategy, aided by incremental condition estimation. On the failure of rank revealing qr factorization software a case study 2006 cached. In linear algebra, a qr decomposition, also known as a qr factorization or qu factorization is a decomposition of a matrix a into a product a qr of an orthogonal matrix q and an upper triangular matrix r.
While this greedy algorithm is known to fail on the socalled kahan. Efficient algorithms for computing a strong rankrevealing. On the failure of rankrevealing qr factorization software a case study, acm trans. The svd can be used to generate an rrqr, but it is not an efficient method to do so. Zlatko drmac and zvonimir bujanovic, title on the failure of rank revealing qr factorization software a case study, year 2006 share. Rankrevealing qr factorization file exchange matlab. Key words, orthogonal factorization, rank revealing factorization, numericalrank.
Rank revealing factorizations and low rank approximations. In the rank one deficient case, the two algorithms produce the. Computing rankrevealing qr factorizations of dense matrices. Bischof, mathematics and computer science division, argonne. Efficient algorithms for computing a strong rankrevealing qr. On the failure of rankrevealing qr factorization software a case study article in acm transactions on mathematical software 352 july 2008 with 30 reads how we measure reads. Qr decomposition is often used to solve the linear least squares problem and is the basis for a particular eigenvalue algorithm, the qr. Improve the ability of software developers to adapt existing software to new hardware. Numerical algorithms for highperformance computational. Jan 24, 2020 we present a novel method for the qr factorization of large tallandskinny matrices that introduces an approximation technique for computing the householder vectors. Practice and experiences wssspe1, november 17, denver, co. Lu factorization with panel rank revealing pivoting and.
A very useful factorization of an m by n m n matrix a is the qr factorization, given by aii qr, where ii e rnxn is a permutation matrix, qe rmx has orthogonal columns and satisfies qq i,, and r e rnx is upper triangular. Dec 09, 2019 on the failure of rankrevealing qr factorization software a case study, acm trans. Matrix 6 was designed to test the behavior of the condition estimation in the presence of clusters for the smallest singular value. Submitted to journal of open research software, 2014. Test matrices 1 through 5 were designed to exercise column pivoting. Qr decomposition for rankdeficient matrix mathematics. On the failure of rankrevealing qr factorization software. On the failure of rankrevealing qr factorization software a case study.
Strong rank revealing lu factorizations sciencedirect. This cited by count includes citations to the following articles in scholar. Plan low rank matrix approximation rank revealing qr factorization lu crtp. We combine computer experiments and numerical analysis to isolate, analyze, and fix the problem. We show that carrqr reveals the numerical rank of a. To compute a lowrank approximation of a dense matrix, in this paper, we study the performance of qr factorization with column pivoting or with restricted pivoting on multicore cpus with a. Pdf multifrontal multithreaded rankrevealing sparse qr. We call the factorization 1 a rankrevealing qr rrqr factorizationif it satisfies. The mexfunctions are using the rankrevealing qr routines xgeqpx and xgeqpy from acm algorithm 782. This approach is very competitive on a hybrid platform equipped with a graphics processor, with a performance advantage over the conventional factorization due to the reduced amount of data. May 03, 20 in this paper we introduce carrqr, a communication avoiding rank revealing qr factorization with tournament pivoting. The use of householder transformations is inherently the most simple of the numerically stable qr decomposition algorithms due to the use of reflections as the mechanism for producing zeroes in the r matrix. Qr decomposition of a large sparse matrix is used to solve the linear least squares ls problem arising in power system state estimation.